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  • PLS_Toolbox FAQ
    the basis that is being used for T 2 is the PLS loads rather than the PCA loads For Q we actually calculate the eigenvalues of the residual subspace and it is exactly the same as in PCA For T 2 there is an approximation made of the eigenvalues If Tcal is the column vectors of scores from your calibration model extract from the model loads 1 1 field f

    Original URL path: http://eigenvector.com/faq/index.php?id=6 (2016-04-27)
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  • PLS_Toolbox FAQ
    Possible Solutions Because the version of IMGPCA provided in the standard PLS Toolbox requires some inputs to operate IMGPCA is not well suited to automated analysis Although future versions of the PLS Toolbox will allow this the current version requires you use the basic PCA routine and handle the image aspects yourself First create a preprocessing structure use the preprocess function s preprocess This will bring up a dialog box that lets you specify what preprocessing you want When you click OK it will return a preprocessing structure s Alternatively you can request the preprocessing method directly using the default keyword See preprocess help for more information s description Mean Center calibrate data out 1 mncn data apply data scale data out 1 undo data rescale data out 1 out settingsgui settingsonadd 0 usesdataset 0 caloutputs 1 keyword Mean Center userdata Next create a PCA options structure using opts pca options opts name options display on plots final outputversion 3 preprocessing blockdetails standard then put the preprocessing structure s into this opts preprocessing 1 s opts name options display on plots final outputversion 3 preprocessing 1x1 struct blockdetails standard Turn off the display and turn the plots to none opts

    Original URL path: http://eigenvector.com/faq/index.php?id=11 (2016-04-27)
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  • PLS_Toolbox FAQ
    the eigenvalues for the residuals from the model Assuming you have a model structure named model qlimit residuallimit model detail reseig cl where cl is the confidence limit desired in fractional confidence limit 0 95 Note that for some model types detail reseig is not defined In these cases you ll need to calculate the raw residuals themselves You can usually do this with datahat but you need to pass

    Original URL path: http://eigenvector.com/faq/index.php?id=65 (2016-04-27)
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  • PLS_Toolbox FAQ
    PLSDA model Possible Solutions Because of the unique relationship between weights and loadings in a PLS model the calculation of scores for new data does not simply involve a projection onto the loadings as it does with PCR or PCA i e Tnew XnewP Given new data Xnew the scores for these new samples are instead calculated using T new X new W P T W 1 where W is

    Original URL path: http://eigenvector.com/faq/index.php?id=84 (2016-04-27)
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  • PLS_Toolbox FAQ
    MIA Toolbox EMSC Toolbox Solo Solo MIA Solo Predictor Model Exporter DataSet Object DSO Floating Licenses Training Training Overview Eigenvector University EigenU Online Courses Resources Contact Us Search Site Search for FAQ Frequently Asked Questions Browse FAQ Browse Documentation Wiki Browse EigenGuide Videos Search for Keyword s Issue How do I change the default options for a function Possible Solutions This question is answered on the Wiki page Working With

    Original URL path: http://eigenvector.com/faq/index.php?id=16 (2016-04-27)
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  • PLS_Toolbox FAQ
    are in one or more classes This y block is usually a logical boolean array where each column represents one classes membership A value of 1 in a column indicates that the given sample is a member of that column s class A value of 0 indicates that sample is not a member of the class The report at the end of crossval provides a tabular description of the results each column In these tables the numbers represent misclassification rates These are fractional errors of classification where 0 indicates that no samples in the given group were mis classified and 1 indicates that all samples in the given group were mis classified Specifically the groups in each table are usually labeled as class 0 and class 1 see below for an example Class 0 represents the group of samples which were labeled 0 not in class for the given column Class 1 represents the group of samples which were labeled 1 in class As such the misclassification results for Class 0 can be interpreted as false postive rates and the misclassification results for Class 1 can be interpreted as false negative rates In the example below the false positive rate

    Original URL path: http://eigenvector.com/faq/index.php?id=80 (2016-04-27)
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  • PLS_Toolbox FAQ
    make PlotGUI send its plot to a new figure and not overwrite the current figure Possible Solutions PlotGUI acts much like the standard Matlab PLOT command in that the plotgui command sends the plot to the current figure whether or not it was previously a PlotGUI controlled figure This will overwrite any plot already on that figure To send a PlotGUI plot to a new figure include the keyword new

    Original URL path: http://eigenvector.com/faq/index.php?id=3 (2016-04-27)
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  • PLS_Toolbox FAQ
    do I make the plotscores commands shown at the end of the VARIMAX demo work Possible Solutions NOTE See also the FAQ item relating to a bug in PLOTSCORES pre version 3 0 4 There is a typo in the varimax demo Near the end of the demo it says that you can explore the scores and loadings using the plotscores commands If you try to execute them as written

    Original URL path: http://eigenvector.com/faq/index.php?id=22 (2016-04-27)
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