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  • Background Subtraction Method
    the new Zooprocess 5 05 onto the website This versions keeps the same 25 limit for the B W ratio I assume that this limit is a real maximum that should not be overpassed You can anyhow press YES and go on processing but it would be a problem in batch mode I would like to check your images before allowing you to change the 25 setting I will send you an email to give you a private FTP addresse to post the image that makes problem Be aware that this new value will be applied to all projects and do not forget to change it when you will download new release Regards Marc P To change manually the 25 limit in Zooprocess Start ImageJ Edit go to the macros folder Select Zooscan Particle Analysis txt macro and open it Search for bwratio CTRL F Change bwratio 25 to bwratio 40 or a greater value Save macro CTRL S picheral Posts 60 Join date 2008 05 02 Background subtraction method 2nd Threshold picheral on Wed May 21 2008 12 38 pm Dear Alison The problem should not be the 25 limit that is a good security again You have probably changed the image process method to neutral without changing the threshold value The normal threshold for the neutral processed images is typically 243 not 250 and can sometimes be set up to 247 Can you edit the configuration file and check Regards Marc P picheral Posts 60 Join date 2008 05 02 Re Background Subtraction Method aspear on Fri May 15 2009 7 25 pm Alison wrote We are getting an error greater than 25 of pixels are black when attempting to use the background subtraction method There are lots of black spots especially to the left side of the

    Original URL path: http://zooscan.forumakers.com/t7-background-subtraction-method (2016-02-14)
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  • Profile - Alison
    FAQ Search Search Query Display results as Posts Topics Advanced Search Memberlist Usergroups Register Log in Current date time is Sun Feb 14 2016 7 18 pm Viewing profile Alison Visitor messages Profile Statistics Contact All about Alison Posts 7

    Original URL path: http://zooscan.forumakers.com/u9 (2016-02-14)
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  • Zooprocess for Dummies
    nobody to explain me the basics of the program I was told to learn the Zooprocess on my own without Zooscan just to understand how to process the scans Therefore on my PC only ImageJ and Zooscan are installed As I understood Vuescan is not a must I downloaded Zooprocess demo and Zooscan train rectangle discus together with the manual from the site The problem is how to start to learn the image processing with them The manual doesn t help me maybe it s due to my not so perfect English I tried to create a new project and to copy the folders and the files from the training sets to the project folder but the Zooprocess gives me this or that file is not found and aborts the program So the question is how do I deal with the training sets to start learning the Zooprocess Korolla Posts 1 Join date 2009 04 23 Zooprocess is not a prediction identification software picheral on Mon May 04 2009 12 32 pm Zooprocess is intended for image acquisition and process You must use Plankton Identifier for the identification tasks Regards Marc P picheral Posts 60 Join date 2008 05 02

    Original URL path: http://zooscan.forumakers.com/t33-zooprocess-for-dummies (2016-02-14)
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  • Profile - Korolla
    Query Display results as Posts Topics Advanced Search Memberlist Usergroups Register Log in Current date time is Sun Feb 14 2016 7 18 pm Viewing profile Korolla Visitor messages Profile Statistics Contact All about Korolla Posts 1 Join date 2009

    Original URL path: http://zooscan.forumakers.com/u33 (2016-02-14)
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  • Rolling Ball Background Subtraction in v. 6.10
    for anyone else Edit I have some files that won t process at all I get an error message telling me that the log file has been corrupted which is true If I replace the log file I have the same problem Also in the temp pid file only the area is calculated Other values are reported as NaN Alison Posts 7 Join date 2008 05 05 Similar topics Similar

    Original URL path: http://zooscan.forumakers.com/t32-rolling-ball-background-subtraction-in-v-6-10 (2016-02-14)
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  • Identfication problems
    issued from the prediction by PKId into the pid results folder It should work but we use to predict also the detailled files in PKId to get the dat1 txt files predicted You have to place all these predicted files into the pid results folder and start the extract vignettes in folder tool Note DO NOT predict more than 20 PID files at the same time You may experience false data in the dat1 txt files Regards Marc P picheral Posts 60 Join date 2008 05 02 Re Identfication problems Jonern on Mon Mar 30 2009 4 31 pm Greetings Marc I have put both the global analasys file and the dat1 txt file from PkID into the pid results folder But still the extraction process ends in the same way A folder is created named with date and time containing a log file saying vignettes extracted 0 Jonern Posts 7 Join date 2008 09 09 Extract vignette tool picheral on Mon Mar 30 2009 11 08 pm Dear Jonem I did not know the problem that you are discribing hereby I am actually working on the new version 6 of Zooprocess that we use today for most of our vignette extractions I did some improvements on the tool for this new realease but we are still using the 5 12 on a daily base for vignette tasks on one PC Can you please tell me the date and time of the file Zooscan extract vignette to folders3 txt file that you will find in the ImageJ Macros folder Are you using the Zooprocess 5 12 version I will try to find the bug or to send you another file Regards Marc P picheral Posts 60 Join date 2008 05 02 Re Identfication problems Jonern on Tue Apr 14 2009

    Original URL path: http://zooscan.forumakers.com/t27-identfication-problems (2016-02-14)
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  • About separation using vignettes
    No pour sauvegarder les résultats pourtant j ai toujours le meme nombre d individus à la fin comment faire pour qu il prenne en compte le séparations et reconsidére les vignettes traitées il faut relancer le process je ne sais pas si c est normal mais le manuel ne correspond pas à ce qui s affiche a l écran pourtant j ai la 5 12 et le manuel le plus récent celui distribué pendant le training Cordialement Boris Hello Boris When you pressed NO It was written Press No to process later You thus have to process again the image including the separation mask that you have created during the separation Convert and Process in batch mode Process Image AND particles Disable the skip options Best regards Marc P picheral Posts 60 Join date 2008 05 02 Re About separation using vignettes Boris on Thu Mar 26 2009 2 06 pm ok so you need to reprocess all the image it s not possible to process only the vignette in wich we are drawn a line of separation Boris Posts 5 Join date 2009 03 25 Reprocessing after separation on vignettes picheral on Thu Mar 26 2009 3 47 pm

    Original URL path: http://zooscan.forumakers.com/t30-about-separation-using-vignettes (2016-02-14)
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  • About salps
    treshold Thanks Boris Posts 5 Join date 2009 03 25 Imaging salps with Zooscan picheral on Thu Mar 26 2009 11 56 am Dear Boris The response is to be adapted considering the purpose of your scanning Will the results be merged with those coming from other scans done using a defined resolution or be analysed independantly In the later case you can play with the parametres but you will

    Original URL path: http://zooscan.forumakers.com/t31-about-salps (2016-02-14)
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